Sequence-Dependent Persistence Length of Long DNA
نویسندگان
چکیده
منابع مشابه
Sequence-Dependent Persistence Lengths of DNA.
A Monte Carlo code applied to the cgDNA coarse-grain rigid-base model of B-form double-stranded DNA is used to predict a sequence-averaged persistence length of lF = 53.5 nm in the sense of Flory, and of lp = 160 bp or 53.5 nm in the sense of apparent tangent-tangent correlation decay. These estimates are slightly higher than the consensus experimental values of 150 bp or 50 nm, but we believe ...
متن کاملPersistence Length of DNA Macromolecule with Kinks
The study of configurational parameters of deformed DNA is a relevant problem in research of such important biological process as double helix compactization in cell. The deformations accompanied with local disruptions of the regular macromolecule structure cause significant bending of the double helix, or kinks. In this paper an approach for Kratky-Porod model to calculate persistence length o...
متن کاملTemperature dependence of DNA persistence length
We have determined the temperature dependence of DNA persistence length, a, using two different methods. The first approach was based on measuring the j-factors of short DNA fragments at various temperatures. Fitting the measured j-factors by the theoretical equation allowed us to obtain the values of a for temperatures between 5°C and 42°C. The second approach was based on measuring the equili...
متن کاملSequence Dependent Long Range Hole Transport in DNA
A guanine radical cation (G+•) was site-selectively generated in double stranded DNA and the charge transfer in different oligonucleotide sequences was investigated. The method is based on the competition between a charge transfer from G+• through the DNA and its trapping reaction with H2O. We analyzed the hole transfer from this G+• to a GGG unit through one, two, three, and four AT base pairs...
متن کاملLong-term persistence of bacterial DNA
The persistence of bacterial DNA over geological timespans remains a contentious issue. In direct contrast to in vitro based predictions, bacterial DNA and even culturable cells have been reported from various ancient specimens many million years (Ma) old [1–8]. As both ancient DNA studies and the revival of microorganisms are known to be susceptible to contamination [8–10], it is concerning th...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Physical Review Letters
سال: 2017
ISSN: 0031-9007,1079-7114
DOI: 10.1103/physrevlett.119.227802